Transcript: PANCR:3

Basic information

LNCipedia transcript ID: PANCR:3 
HGNC Gene Symbol: PANCR    
HGNC Full Gene Name: PITX2 adjacent non-coding RNA
Ensembl Gene ID: ENSG00000250103
Ensembl Transcript ID: ENST00000503456
Location (hg38): chr4:110603361-110615415
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 493 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007813; ENST00000503456; ENST00000503456.1; RP11-380D23.2-001; OTTHUMT00000363857.1; NONHSAT097820
Alternative gene names: XLOC_004044; linc-ELOVL6-1; ENSG00000250103; RP11-380D23.2; ENSG00000250103.1; OTTHUMG00000161118.1; ENSG00000250103.2; ; PANCR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.7989 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PANCR:3 no no no no

Available literature

  1. Gore-Panter (2016), PANCR, the PITX2 Adjacent Noncoding RNA, Is Expressed in Human Left Atria and Regulates PITX2c Expression., Circ Arrhythm Electrophysiol
  2. Sailer (2016), PITX2 and PANCR DNA methylation predicts overall survival in patients with head and neck squamous cell carcinoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PITX2-1:2
3.1 lnc-PITX2-1:2
4.0 PANCR:3
4.1 PANCR:3
5.0 PANCR:3
5.1 PANCR:3
5.2 PANCR:3