Transcript: PANDAR:1

Basic information

LNCipedia transcript ID: PANDAR:1 
HGNC Gene Symbol: PANDAR    
HGNC Full Gene Name: promoter of CDKN1A antisense DNA damage activated RNA
Ensembl Gene ID: ENSG00000281450
Ensembl Transcript ID: ENST00000629595
RefSeq ID: NR_109836
Location (hg38): chr6:36673621-36675126
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1506 bp
Exons: 1
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109836; ENST00000629595.1; NR_109836.1
Alternative gene names: ENSG00000281450.1; PANDAR; PANDA


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.7518 non-coding 
CPAT coding probability 29.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PANDAR:1 no no no no

Available literature

  1. Hung (2011), Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CPNE5-3:1
4.0 PANDAR:1
4.1 PANDAR:1
5.0 PANDAR:1
5.1 PANDAR:1
5.2 PANDAR:1