Transcript: PAPPA-AS1:1

Basic information

LNCipedia transcript ID: PAPPA-AS1:1 
LNCipedia gene ID: PAPPA-AS1
Location (hg38): chr9:116398158-116400606
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2449 bp
Exons: 1
Sources: Refseq - Dec 2014
Alternative transcript names: NR_103711
Alternative gene names: PAPPA-AS; DIPAS; TAF4B; TAF2C2; TAFII105; NCRNA00156


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.6212 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAPPA-AS1:1 no no no no

Available literature

  1. García (2005), Identification of two novel human genes, DIPLA1 and DIPAS, expressed in placenta tissue., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAPPA-AS1-4:1
4.0 PAPPA-AS1:1
4.1 PAPPA-AS1:1
5.0 PAPPA-AS1:1
5.1 PAPPA-AS1:1
5.2 PAPPA-AS1:1