Transcript: PART1:6

Basic information

LNCipedia transcript ID: PART1:6 
HGNC Gene Symbol: PART1    
HGNC Full Gene Name: prostate androgen-regulated transcript 1
Ensembl Gene ID: ENSG00000152931
Ensembl Transcript ID: ENST00000506884
Location (hg38): chr5:60488140-60547657
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2068 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506884; TCONS_00009407; ENST00000506884.1; PART1-002; OTTHUMT00000368802.1
Alternative gene names: ENSG00000152931; XLOC_004399; linc-NDUFAF2-3; PART1; ENSG00000152931.6; OTTHUMG00000162213.2; ENSG00000152931.7; DKFZP586D0823; NCRNA00206


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.0127 non-coding 
CPAT coding probability 1.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PART1:6 yes no no no

Available literature

  1. Webb (2015), RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles., BMC Genomics
  2. Zhang (2013), A long non-coding RNA signature in glioblastoma multiforme predicts survival., Neurobiol. Dis.
  3. Lin (2000), PART-1: a novel human prostate-specific, androgen-regulated gene that maps to chromosome 5q12., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC109486.1-1:2
3.1 lnc-AC109486.1-1:2
4.0 PART1:6
4.1 PART1:6
5.0 PART1:6
5.1 PART1:6
5.2 PART1:6