Transcript: PARTICL:1

Basic information

LNCipedia transcript ID: PARTICL:1 
LNCipedia gene ID: PARTICL
Location (hg38): chr2:85537380-85539059
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1680 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA790:1
Alternative gene names: PARTICLE


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -85.4978 non-coding 
CPAT coding probability 23.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PARTICL:1 no no no no

Available literature

  1. O'Leary (2017), PARTICLE triplexes cluster in the tumor suppressor WWOX and may extend throughout the human genome., Sci Rep
  2. O'Leary (2015), PARTICLE, a Triplex-Forming Long ncRNA, Regulates Locus-Specific Methylation in Response to Low-Dose Irradiation., Cell Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 PARTICL:1
4.1 PARTICL:1
5.0 PARTICL:1
5.1 PARTICL:1
5.2 PARTICL:1