Transcript: PAUPAR:10

Basic information

LNCipedia transcript ID: PAUPAR:10 
LNCipedia gene ID: PAUPAR
Location (hg38): chr11:31819147-31837055
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 17909 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT018635
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.914 non-coding 
CPAT coding probability 30.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAUPAR:10 yes no no no

Available literature

  1. Pavlaki (2018), The long non-coding RNA <i>Paupar</i> promotes KAP1-dependent chromatin changes and regulates olfactory bulb neurogenesis., EMBO J.
  2. Vance (2014), The long non-coding RNA Paupar regulates the expression of both local and distal genes., EMBO J.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ELP4-3:1
4.0 lnc-ELP4-3:1
4.1 lnc-ELP4-3:1
5.0 lnc-ELP4-3:1
5.1 PAUPAR:3
5.2 PAUPAR:10