Transcript: PAUPAR:13

Basic information

LNCipedia transcript ID: PAUPAR:13 
HGNC Gene Symbol: PAUPAR    
HGNC Full Gene Name: PAX6 upstream antisense RNA
Ensembl Gene ID: ENSG00000281880
Ensembl Transcript ID: ENST00000630360
Location (hg38): chr11:31826347-31829311
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2965 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000630360.1
Alternative gene names: ENSG00000281880.1; PAUPAR; ENSG00000281880.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -9.3204 non-coding 
CPAT coding probability 18.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAUPAR:13 yes no no no

Available literature

  1. Pavlaki (2018), The long non-coding RNA <i>Paupar</i> promotes KAP1-dependent chromatin changes and regulates olfactory bulb neurogenesis., EMBO J.
  2. Vance (2014), The long non-coding RNA Paupar regulates the expression of both local and distal genes., EMBO J.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ELP4-3:3
4.1 lnc-ELP4-3:3
5.0 lnc-ELP4-3:3
5.1 PAUPAR:6
5.2 PAUPAR:13