Transcript: PAUPAR:9

Basic information

LNCipedia transcript ID: PAUPAR:9 
HGNC Gene Symbol: PAUPAR    
HGNC Full Gene Name: PAX6 upstream antisense RNA
Ensembl Gene ID: ENSG00000281880
Ensembl Transcript ID: ENST00000646959
Location (hg38): chr11:31812334-31829048
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 1724 bp
Exons: 2
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000646959.1
Alternative gene names: ENSG00000281880.2; PAUPAR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -18.8032 non-coding 
CPAT coding probability 10.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAUPAR:9 no no no no

Available literature

  1. Pavlaki (2018), The long non-coding RNA <i>Paupar</i> promotes KAP1-dependent chromatin changes and regulates olfactory bulb neurogenesis., EMBO J.
  2. Vance (2014), The long non-coding RNA Paupar regulates the expression of both local and distal genes., EMBO J.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-QSER1-12:2
5.1 PAUPAR:2
5.2 PAUPAR:9