Transcript: PAX8-AS1:27

Basic information

LNCipedia transcript ID: PAX8-AS1:27 
LNCipedia gene ID: PAX8-AS1
Location (hg38): chr2:113238090-113240828
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2739 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA749:1
Alternative gene names:

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -39.2955 non-coding 
CPAT coding probability 3.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAX8-AS1:27 yes no no no

Available literature

  1. Yu (2018), Baicalein inhibits breast cancer growth via activating a novel isoform of the long noncoding RNA PAX8-AS1-N., J. Cell. Biochem.
  2. Han (2016), Expression quantitative trait loci in long non-coding RNA PAX8-AS1 are associated with decreased risk of cervical cancer., Mol. Genet. Genomics

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 PAX8-AS1:27
4.1 PAX8-AS1:27
5.0 PAX8-AS1:27
5.1 PAX8-AS1:27
5.2 PAX8-AS1:27