Transcript: PAX8-AS1:30

Basic information

LNCipedia transcript ID: PAX8-AS1:30 
LNCipedia gene ID: PAX8-AS1
Location (hg38): chr2:113250721-113267009
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2394 bp
Exons: 5
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA748:4
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -133.5749 non-coding 
CPAT coding probability 26.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAX8-AS1:30 yes no no no

Available literature

  1. Yu (2018), Baicalein inhibits breast cancer growth via activating a novel isoform of the long noncoding RNA PAX8-AS1-N., J. Cell. Biochem.
  2. Han (2016), Expression quantitative trait loci in long non-coding RNA PAX8-AS1 are associated with decreased risk of cervical cancer., Mol. Genet. Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 PAX8-AS1:30
4.1 PAX8-AS1:30
5.0 PAX8-AS1:30
5.1 PAX8-AS1:30
5.2 PAX8-AS1:30