Transcript: PAX8-AS1:35

Basic information

LNCipedia transcript ID: PAX8-AS1:35 
LNCipedia gene ID: PAX8-AS1
Location (hg38): chr2:113263307-113270231
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 284 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT073773
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -299.389 non-coding 
CPAT coding probability 3.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PAX8-AS1:35 yes no no no

Available literature

  1. Yu (2018), Baicalein inhibits breast cancer growth via activating a novel isoform of the long noncoding RNA PAX8-AS1-N., J. Cell. Biochem.
  2. Han (2016), Expression quantitative trait loci in long non-coding RNA PAX8-AS1 are associated with decreased risk of cervical cancer., Mol. Genet. Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PSD4-1:21
4.0 PAX8-AS1:35
4.1 PAX8-AS1:35
5.0 PAX8-AS1:35
5.1 PAX8-AS1:35
5.2 PAX8-AS1:35