Transcript: PCAT18:1

Basic information

LNCipedia transcript ID: PCAT18:1 
HGNC Gene Symbol: PCAT18    
HGNC Full Gene Name: prostate cancer associated transcript 18
Ensembl Gene ID: ENSG00000265369
Ensembl Transcript ID: ENST00000579458
RefSeq ID: NR_024259
Location (hg38): chr18:26687621-26703638
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2598 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000579458.1; RP11-17A19.1-001; OTTHUMT00000446446.1; NONHSAT058756; NR_024259; NR_024259.1
Alternative gene names: ENSG00000265369.1; RP11-17A19.1; OTTHUMG00000179450.1; ENSG00000265369.2; U3; ENSG00000265369.3; PCAT18; LINC01092


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.6256 non-coding 
CPAT coding probability 3.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCAT18:1 no no no no

Available literature

  1. Crea (2014), Identification of a long non-coding RNA as a novel biomarker and potential therapeutic target for metastatic prostate cancer., Oncotarget
  2. Hu (2014), Long noncoding RNA GAPLINC regulates CD44-dependent cell invasiveness and associates with poor prognosis of gastric cancer., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCTD1-1:1
4.0 PCAT18:1
4.1 PCAT18:1
5.0 PCAT18:1
5.1 PCAT18:1
5.2 PCAT18:1