Transcript: PCAT18:2

Basic information

LNCipedia transcript ID: PCAT18:2 
LNCipedia gene ID: PCAT18
Location (hg38): chr18:26689317-26689529
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 213 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT058758; ENST00000391065.1
Alternative gene names: ENSG00000265369.2; U3; LINC01092


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCAT18:2 no no no no

Available literature

  1. Crea (2014), Identification of a long non-coding RNA as a novel biomarker and potential therapeutic target for metastatic prostate cancer., Oncotarget
  2. Hu (2014), Long noncoding RNA GAPLINC regulates CD44-dependent cell invasiveness and associates with poor prognosis of gastric cancer., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCTD1-1:2
4.0 PCAT18:2
4.1 PCAT18:2
5.0 PCAT18:2
5.1 PCAT18:2
5.2 PCAT18:2