Transcript: PCAT18:5

Basic information

LNCipedia transcript ID: PCAT18:5 
LNCipedia gene ID: PCAT18
Location (hg38): chr18:26695218-26703638
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 305 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000265369.2|FTMT26900016607.1
Alternative gene names: LINC01092


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -582.943 non-coding 
CPAT coding probability 4.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCAT18:5 no no no no

Available literature

  1. Crea (2014), Identification of a long non-coding RNA as a novel biomarker and potential therapeutic target for metastatic prostate cancer., Oncotarget
  2. Hu (2014), Long noncoding RNA GAPLINC regulates CD44-dependent cell invasiveness and associates with poor prognosis of gastric cancer., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PCAT18:5
5.0 PCAT18:5
5.1 PCAT18:5
5.2 PCAT18:5