Transcript: PCAT19:11

Basic information

LNCipedia transcript ID: PCAT19:11 
HGNC Gene Symbol: PCAT19    
HGNC Full Gene Name: prostate cancer associated transcript 19
Ensembl Gene ID: ENSG00000267107
Ensembl Transcript ID: ENST00000598215
Location (hg38): chr19:41456029-41479143
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 596 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT066455; ENST00000598215.1
Alternative gene names: ENSG00000267107.2; AC011526.1; ENSG00000267107.6; PCAT19; LINC01190


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.5698 non-coding 
CPAT coding probability 4.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCAT19:11 no no no no

Available literature

  1. Hazelett (2014), Comprehensive functional annotation of 77 prostate cancer risk loci., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP5SL-1:11
4.0 PCAT19:11
4.1 PCAT19:11
5.0 PCAT19:11
5.1 PCAT19:11
5.2 PCAT19:11