Transcript: PCAT19:14

Basic information

LNCipedia transcript ID: PCAT19:14 
LNCipedia gene ID: PCAT19
Location (hg38): chr19:41454169-41456489
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 702 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT066448
Alternative gene names: LINC01190


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.2442 non-coding 
CPAT coding probability 3.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCAT19:14 no no no no

Available literature

  1. Hazelett (2014), Comprehensive functional annotation of 77 prostate cancer risk loci., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP5SL-1:14
4.0 PCAT19:14
4.1 PCAT19:14
5.0 PCAT19:14
5.1 PCAT19:14
5.2 PCAT19:14