Transcript: PCAT19:3

Basic information

LNCipedia transcript ID: PCAT19:3 
LNCipedia gene ID: PCAT19
Location (hg38): chr19:41454174-41500644
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3467 bp
Exons: 4
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000504363
Alternative gene names: ENSG00000249527; LINC01190


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.7376 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCAT19:3 no no no no

Available literature

  1. Hazelett (2014), Comprehensive functional annotation of 77 prostate cancer risk loci., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP5SL-1:3
3.1 lnc-ATP5SL-1:3
4.0 PCAT19:3
4.1 PCAT19:3
5.0 PCAT19:3
5.1 PCAT19:3
5.2 PCAT19:3