Transcript: PCAT19:5

Basic information

LNCipedia transcript ID: PCAT19:5 
LNCipedia gene ID: PCAT19
Location (hg38): chr19:41455317-41500644
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1436 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT066453
Alternative gene names: LINC01190


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.5698 non-coding 
CPAT coding probability 1.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCAT19:5 no no no no

Available literature

  1. Hazelett (2014), Comprehensive functional annotation of 77 prostate cancer risk loci., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP5SL-1:4
4.0 PCAT19:5
4.1 PCAT19:5
5.0 PCAT19:5
5.1 PCAT19:5
5.2 PCAT19:5