Transcript: PCAT19:9

Basic information

LNCipedia transcript ID: PCAT19:9 
LNCipedia gene ID: PCAT19
Location (hg38): chr19:41478543-41500628
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 787 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT066457
Alternative gene names: LINC01190


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.698 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCAT19:9 no no no no

Available literature

  1. Hazelett (2014), Comprehensive functional annotation of 77 prostate cancer risk loci., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP5SL-1:9
4.0 PCAT19:9
4.1 PCAT19:9
5.0 PCAT19:9
5.1 PCAT19:9
5.2 PCAT19:9