Transcript: PCAT1:4

Basic information

LNCipedia transcript ID: PCAT1:4 
HGNC Gene Symbol: PCAT1    
HGNC Full Gene Name: prostate cancer associated transcript 1
Ensembl Gene ID: ENSG00000253438
Ensembl Transcript ID: ENST00000561978
RefSeq ID: NR_045262
Location (hg38): chr8:127013154-127021014
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1992 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000561978.1; PCAT1-002; OTTHUMT00000421797.1; NONHSAT129015; NR_045262; NR_045262.1
Alternative gene names: ENSG00000253438.2; PCAT1; OTTHUMG00000165061.2; PCAT-1; PCA1; ENSG00000253438.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.3562 non-coding 
CPAT coding probability 81.95% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PCAT1:4 no no no no

Available literature

  1. Xie (2016), Long non-coding RNAs in colorectal cancer., Oncotarget
  2. Kim (2015), Genome-wide transcript profiling reveals novel breast cancer-associated intronic sense RNAs., PLoS ONE
  3. Liu (2015), Inducing cell growth arrest and apoptosis by silencing long non-coding RNA PCAT-1 in human bladder cancer., Tumour Biol.
  4. Rupaimoole (2015), Long Noncoding RNA Ceruloplasmin Promotes Cancer Growth by Altering Glycolysis., Cell Rep
  5. Shi (2015), Upregulation of the long noncoding RNA PCAT-1 correlates with advanced clinical stage and poor prognosis in esophageal squamous carcinoma., Tumour Biol.
  6. Shih (2015), Non-Coding RNAs in Castration-Resistant Prostate Cancer: Regulation of Androgen Receptor Signaling and Cancer Metabolism., Int J Mol Sci
  7. Sugihara (2015), Noncoding RNA Expression Aberration Is Associated with Cancer Progression and Is a Potential Biomarker in Esophageal Squamous Cell Carcinoma., Int J Mol Sci
  8. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  9. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  10. Yan (2015), Prognostic significance of long non-coding RNA PCAT-1 expression in human hepatocellular carcinoma., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POU5F1B-2:2
4.0 PCAT1:4
4.1 PCAT1:4
5.0 PCAT1:4
5.1 PCAT1:4
5.2 PCAT1:4

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