Transcript: PCAT5:2

Basic information

LNCipedia transcript ID: PCAT5:2 
LNCipedia gene ID: PCAT5
Location (hg38): chr10:35796396-35798307
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1847 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT012742; FPKM1_group_3178_transcript_1
Alternative gene names: TPCAT-10-36067


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.7385 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCAT5:2 no no no no

Available literature

  1. Ylipää (2015), Transcriptome Sequencing Reveals PCAT5 as a Novel ERG-Regulated Long Noncoding RNA in Prostate Cancer., Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GJD4-3:2
4.0 PCAT5:2
4.1 PCAT5:2
5.0 PCAT5:2
5.1 PCAT5:2
5.2 PCAT5:2