Transcript: PCBP1-AS1:113

Basic information

LNCipedia transcript ID: PCBP1-AS1:113 
HGNC Gene Symbol: PCBP1-AS1    
HGNC Full Gene Name: PCBP1 antisense RNA 1
Ensembl Gene ID: ENSG00000179818
Ensembl Transcript ID: ENST00000625490
Location (hg38): chr2:69963394-70086198
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 666 bp
Exons: 7
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000625490.2
Alternative gene names: ENSG00000179818.13; PCBP1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -28.5936 non-coding 
CPAT coding probability 12.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCBP1-AS1:113 no no no no

Available literature

  1. Mo (2017), Identification and evaluation of lncRNA and mRNA integrative modules in human peripheral blood mononuclear cells., Epigenomics
  2. van Heesch (2014), Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes., Genome Biol.
  3. Derrien (2012), The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 PCBP1-AS1:113
4.1 PCBP1-AS1:113
5.0 PCBP1-AS1:113
5.1 PCBP1-AS1:113
5.2 PCBP1-AS1:113