Transcript: PCDH9-AS3:1

Basic information

LNCipedia transcript ID: PCDH9-AS3:1 
LNCipedia gene ID: PCDH9-AS3
RefSeq ID: NR_046636
Location (hg38): chr13:66977389-66985776
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 522 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT034215; NR_046636; NR_046636.1
Alternative gene names: ; PCDH9-AS3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.6713 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCDH9-AS3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL445989.1-15:2
4.0 PCDH9-AS3:1
4.1 PCDH9-AS3:1
5.0 PCDH9-AS3:1
5.1 PCDH9-AS3:1
5.2 PCDH9-AS3:1