Transcript: PCED1B-AS1:3

Basic information

LNCipedia transcript ID: PCED1B-AS1:3 
LNCipedia gene ID: PCED1B-AS1
RefSeq ID: NR_026544
Location (hg38): chr12:47208420-47216443
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2502 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT027908; NR_026544; NR_026544.1
Alternative gene names: ; PCED1B-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.5941 non-coding 
CPAT coding probability 2.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCED1B-AS1:3 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AMIGO2-1:12
4.0 PCED1B-AS1:3
4.1 PCED1B-AS1:3
5.0 PCED1B-AS1:3
5.1 PCED1B-AS1:3
5.2 PCED1B-AS1:3