Transcript: PCF11-AS1:10

Basic information

LNCipedia transcript ID: PCF11-AS1:10 
LNCipedia gene ID: PCF11-AS1
Ensembl Gene ID: ENSG00000247137
Ensembl Transcript ID: ENST00000624533
Location (hg38): chr11:83190906-83193200
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2295 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT023391; ENST00000624533.1
Alternative gene names: ENSG00000247137.8; RP11-727A23.5; ENST00000602322.1; AP000873.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.9922 non-coding 
CPAT coding probability 2.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCF11-AS1:10 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC90B-2:11
4.0 PCF11-AS1:10
4.1 PCF11-AS1:10
5.0 PCF11-AS1:10
5.1 PCF11-AS1:10
5.2 PCF11-AS1:10