Transcript: PCF11-AS1:13

Basic information

LNCipedia transcript ID: PCF11-AS1:13 
HGNC Gene Symbol: PCF11-AS1    
HGNC Full Gene Name: PCF11 antisense RNA 1
Ensembl Gene ID: ENSG00000269939
Ensembl Transcript ID: ENST00000602322
Location (hg38): chr11:83185521-83187036
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1516 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT023389; ENST00000602322.1
Alternative gene names: ENSG00000269939.1; RP11-727A23.11; ENST00000602322.1; PCF11-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.9646 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCF11-AS1:13 yes no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC90B-2:13
4.0 PCF11-AS1:13
4.1 PCF11-AS1:13
5.0 PCF11-AS1:13
5.1 PCF11-AS1:13
5.2 PCF11-AS1:13