Transcript: PCF11-AS1:25

Basic information

LNCipedia transcript ID: PCF11-AS1:25 
LNCipedia gene ID: PCF11-AS1
RefSeq ID: NR_133914
Location (hg38): chr11:83185521-83187484
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1964 bp
Exons: 1
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_133914.1
Alternative gene names: PCF11-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -32.9646 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PCF11-AS1:25 yes no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 PCF11-AS1:25
5.1 PCF11-AS1:25
5.2 PCF11-AS1:25