Transcript: PDCD4-AS1:1

Basic information

LNCipedia transcript ID: PDCD4-AS1:1 
HGNC Gene Symbol: PDCD4-AS1    
HGNC Full Gene Name: PDCD4 antisense RNA 1
Ensembl Gene ID: ENSG00000203497
Ensembl Transcript ID: ENST00000420367
Location (hg38): chr10:110869868-110872233
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 778 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420367.1; RP11-313D6.4-001; OTTHUMT00000050346.1; NONHSAT016365
Alternative gene names: ENSG00000203497.2; RP11-313D6.4; OTTHUMG00000019045.1; PDCD4-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.1125 non-coding 
CPAT coding probability 2.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PDCD4-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BBIP1-1:1
4.0 PDCD4-AS1:1
4.1 PDCD4-AS1:1
5.0 PDCD4-AS1:1
5.1 PDCD4-AS1:1
5.2 PDCD4-AS1:1