Transcript: PGM5-AS1:1

Basic information

LNCipedia transcript ID: PGM5-AS1:1 
LNCipedia gene ID: PGM5-AS1
Location (hg38): chr9:68355139-68360875
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2554 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc004ahc_1
Alternative gene names: FAM233A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.42 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PGM5-AS1:1 yes no no no

Available literature

  1. Zhu (2017), Identification of key lncRNAs in colorectal cancer progression based on associated protein-protein interaction analysis., World J Surg Oncol
  2. Zhu (2016), Long non-coding RNA LOC572558 inhibits bladder cancer cell proliferation and tumor growth by regulating the AKT-MDM2-p53 signaling axis., Cancer Lett.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL353608.1-2:3
4.0 PGM5-AS1:1
4.1 PGM5-AS1:1
5.0 PGM5-AS1:1
5.1 PGM5-AS1:1
5.2 PGM5-AS1:1