Transcript: PGM5-AS1:3

Basic information

LNCipedia transcript ID: PGM5-AS1:3 
LNCipedia gene ID: PGM5-AS1
RefSeq ID: NR_121192
Location (hg38): chr9:68355164-68357866
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 643 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121192; NR_121192.1
Alternative gene names: FAM233A; PGM5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -127.0102 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PGM5-AS1:3 yes no no no

Available literature

  1. Zhu (2017), Identification of key lncRNAs in colorectal cancer progression based on associated protein-protein interaction analysis., World J Surg Oncol
  2. Zhu (2016), Long non-coding RNA LOC572558 inhibits bladder cancer cell proliferation and tumor growth by regulating the AKT-MDM2-p53 signaling axis., Cancer Lett.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL353608.1-2:6
4.0 PGM5-AS1:3
4.1 PGM5-AS1:3
5.0 PGM5-AS1:3
5.1 PGM5-AS1:3
5.2 PGM5-AS1:3