Transcript: PGM5-AS1:7

Basic information

LNCipedia transcript ID: PGM5-AS1:7 
HGNC Gene Symbol: PGM5-AS1    
HGNC Full Gene Name: PGM5 antisense RNA 1
Ensembl Gene ID: ENSG00000224958
Ensembl Transcript ID: ENST00000420855
Location (hg38): chr9:68355189-68357820
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 572 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420855; ENST00000420855.1; RP11-561O23.6-002; OTTHUMT00000052544.1; NONHSAT131741; ENST00000420855.5
Alternative gene names: ENSG00000224958; RP11-561O23.6; ENSG00000224958.1; OTTHUMG00000019962.1; PGM5-AS1; ENSG00000224958.5; FAM233A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.0102 non-coding 
CPAT coding probability 1.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PGM5-AS1:7 yes no no no

Available literature

  1. Zhu (2017), Identification of key lncRNAs in colorectal cancer progression based on associated protein-protein interaction analysis., World J Surg Oncol
  2. Zhu (2016), Long non-coding RNA LOC572558 inhibits bladder cancer cell proliferation and tumor growth by regulating the AKT-MDM2-p53 signaling axis., Cancer Lett.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL353608.1-2:2
3.1 lnc-AL353608.1-2:2
4.0 PGM5-AS1:7
4.1 PGM5-AS1:7
5.0 PGM5-AS1:7
5.1 PGM5-AS1:7
5.2 PGM5-AS1:7