Transcript: PGM5P3-AS1:3

Basic information

LNCipedia transcript ID: PGM5P3-AS1:3 
LNCipedia gene ID: PGM5P3-AS1
RefSeq ID: NR_121190
Location (hg38): chr9:72690-88826
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 405 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121190; NR_121190.1
Alternative gene names: FAM233B; PGM5P3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -21.5526 non-coding 
CPAT coding probability 3.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PGM5P3-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DOCK8-3:6
4.0 PGM5P3-AS1:3
4.1 PGM5P3-AS1:3
5.0 PGM5P3-AS1:3
5.1 PGM5P3-AS1:3
5.2 PGM5P3-AS1:3