Transcript: PGM5P3-AS1:9

Basic information

LNCipedia transcript ID: PGM5P3-AS1:9 
LNCipedia gene ID: PGM5P3-AS1
Location (hg38): chr9:72706-75298
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 528 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000458364.1; RP11-143M1.2-001; OTTHUMT00000051452.1; NONHSAT129890
Alternative gene names: ENSG00000225655.1; RP11-143M1.2; OTTHUMG00000019423.1; FAM233B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.6096 non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PGM5P3-AS1:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DOCK8-3:2
4.0 PGM5P3-AS1:9
4.1 PGM5P3-AS1:9
5.0 PGM5P3-AS1:9
5.1 PGM5P3-AS1:9
5.2 PGM5P3-AS1:9