Transcript: PICSAR:3

Basic information

LNCipedia transcript ID: PICSAR:3 
HGNC Gene Symbol: PICSAR    
HGNC Full Gene Name: P38 inhibited cutaneous squamous cell carcinoma associated lincRNA
Ensembl Gene ID: ENSG00000275874
Ensembl Transcript ID: ENST00000615826
RefSeq ID: NR_024089
Location (hg38): chr21:44999208-45004727
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 733 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000615826.1; NR_024089.2
Alternative gene names: ENSG00000275874.1; LINC00162; PRED74; NLC1-C; PICSAR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -56.8936 non-coding 
CPAT coding probability 5.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PICSAR:3 no no no no

Available literature

  1. Piipponen (2016), Long Noncoding RNA PICSAR Promotes Growth of Cutaneous Squamous Cell Carcinoma by Regulating ERK1/2 Activity., J. Invest. Dermatol.
  2. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  3. Mills (2013), Unique transcriptome patterns of the white and grey matter corroborate structural and functional heterogeneity in the human frontal lobe., PLoS ONE
  4. Kawashima (2006), Genomewide association analysis of human narcolepsy and a new resistance gene., Am. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 PICSAR:3
4.1 PICSAR:3
5.0 PICSAR:3
5.1 PICSAR:3
5.2 PICSAR:3