Transcript: PIK3CD-AS1:1

Basic information

LNCipedia transcript ID: PIK3CD-AS1:1 
HGNC Gene Symbol: PIK3CD-AS1    
HGNC Full Gene Name: PIK3CD antisense RNA 1
Ensembl Gene ID: ENSG00000179840
Ensembl Transcript ID: ENST00000377320
RefSeq ID: NR_027045
Location (hg38): chr1:9652610-9654586
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1823 bp
Exons: 2
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_027045; ENST00000377320.3; NR_027045.1
Alternative gene names: ENSG00000179840.5; PIK3CD-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.6403 non-coding 
CPAT coding probability 74.36% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PIK3CD-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf200-5:1
4.0 PIK3CD-AS1:1
4.1 PIK3CD-AS1:1
5.0 PIK3CD-AS1:1
5.1 PIK3CD-AS1:1
5.2 PIK3CD-AS1:1