Transcript: PIK3CD-AS2:7

Basic information

LNCipedia transcript ID: PIK3CD-AS2:7 
HGNC Gene Symbol: PIK3CD-AS2    
HGNC Full Gene Name: PIK3CD antisense RNA 2
Ensembl Gene ID: ENSG00000231789
Ensembl Transcript ID: ENST00000415330
Location (hg38): chr1:9672426-9687555
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 939 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415330.2
Alternative gene names: ENSG00000231789.2; RP11-558F24.4; PIK3CD-AS2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.3585 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PIK3CD-AS2:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf200-1:4
4.0 PIK3CD-AS2:7
4.1 PIK3CD-AS2:7
5.0 PIK3CD-AS2:7
5.1 PIK3CD-AS2:7
5.2 PIK3CD-AS2:7