Transcript: PINCR:5

Basic information

LNCipedia transcript ID: PINCR:5 
LNCipedia gene ID: PINCR
Location (hg38): chrX:43176966-43196697
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 758 bp
Exons: 4
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT136766; FPKM1_group_34475_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.418 non-coding 
CPAT coding probability 1.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PINCR:5 no no no no

Available literature

  1. Chaudhary (2017), Prosurvival long noncoding RNA <i>PINCR</i> regulates a subset of p53 targets in human colorectal cancer cells by binding to Matrin 3., Elife


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAOA-3:2
4.0 lnc-MAOA-3:2
4.1 lnc-MAOA-3:2
5.0 lnc-MAOA-3:2
5.1 PINCR:2
5.2 PINCR:5