Transcript: PINCR:6

Basic information

LNCipedia transcript ID: PINCR:6 
HGNC Gene Symbol: PINCR    
HGNC Full Gene Name: p53-induced noncoding RNA
Ensembl Gene ID: ENSG00000224294
Ensembl Transcript ID: ENST00000440955
RefSeq ID: NR_110387
Location (hg38): chrX:43176994-43226598
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2228 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00016931; ENST00000440955; ENST00000440955.1; RP3-326I13.1-001; OTTHUMT00000056297.1; NONHSAT136767; NR_110387; NR_110387.1
Alternative gene names: XLOC_007962; linc-MAOA-2; ENSG00000224294; RP3-326I13.1; ENSG00000224294.1; OTTHUMG00000021384.1; PINCR; LOC101927501


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.1963 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PINCR:6 no no no no

Available literature

  1. Chaudhary (2017), Prosurvival long noncoding RNA <i>PINCR</i> regulates a subset of p53 targets in human colorectal cancer cells by binding to Matrin 3., Elife


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAOA-2:1
3.1 lnc-MAOA-3:1
4.0 lnc-MAOA-3:1
4.1 lnc-MAOA-3:1
5.0 lnc-MAOA-3:1
5.1 PINCR:3
5.2 PINCR:6