Transcript: PINK1-AS:1

Basic information

LNCipedia transcript ID: PINK1-AS:1 
HGNC Gene Symbol: PINK1-AS    
HGNC Full Gene Name: PINK1 antisense RNA
Ensembl Gene ID: ENSG00000117242
Ensembl Transcript ID: ENST00000451424
RefSeq ID: NR_046507
Location (hg38): chr1:20642657-20652193
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4443 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000451424.1; PINK1-AS-001; OTTHUMT00000007953.1; NONHSAT001380; NR_046507; NR_046507.1
Alternative gene names: ENSG00000117242.7; PINK1-AS; OTTHUMG00000002840.1; FLJ00387; PINK1AS; naPINK1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 240.7392 coding 
CPAT coding probability 10.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PINK1-AS:1 no no no no

Available literature

  1. Scheele (2007), The human PINK1 locus is regulated in vivo by a non-coding natural antisense RNA during modulation of mitochondrial function., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DDOST-1:1
4.0 PINK1-AS:1
4.1 PINK1-AS:1
5.0 PINK1-AS:1
5.1 PINK1-AS:1
5.2 PINK1-AS:1