Transcript: PINK1-AS:2

Basic information

LNCipedia transcript ID: PINK1-AS:2 
LNCipedia gene ID: PINK1-AS
Location (hg38): chr1:20650363-20650714
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 352 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT001381
Alternative gene names: FLJ00387; PINK1AS; naPINK1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 240.7392 coding 
CPAT coding probability 5.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PINK1-AS:2 yes no no no

Available literature

  1. Scheele (2007), The human PINK1 locus is regulated in vivo by a non-coding natural antisense RNA during modulation of mitochondrial function., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DDOST-1:2
4.0 PINK1-AS:2
4.1 PINK1-AS:2
5.0 PINK1-AS:2
5.1 PINK1-AS:2
5.2 PINK1-AS:2