Transcript: PITPNM2-AS1:6

Basic information

LNCipedia transcript ID: PITPNM2-AS1:6 
HGNC Gene Symbol: PITPNM2-AS1    
HGNC Full Gene Name: PITPNM2 antisense RNA 1
Ensembl Gene ID: ENSG00000251497
Ensembl Transcript ID: ENST00000506255
RefSeq ID: NR_038290
Location (hg38): chr12:123081384-123084744
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2191 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000506255; ENST00000506255.1; RP11-197N18.7-001; OTTHUMT00000401350.1; NONHSAT031561; NR_038290; NR_038290.1
Alternative gene names: ENSG00000251497; RP11-197N18.7; ENSG00000251497.2; OTTHUMG00000168847.1; PITPNM2-AS1; LOC100507091


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.3232 non-coding 
CPAT coding probability 1.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PITPNM2-AS1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARL6IP4-1:1
3.1 lnc-ARL6IP4-1:1
4.0 lnc-ARL6IP4-3:1
4.1 lnc-ARL6IP4-3:1
5.0 lnc-ARL6IP4-3:1
5.1 PITPNM2-AS1:2
5.2 PITPNM2-AS1:6