Transcript: PITPNM2-AS1:8

Basic information

LNCipedia transcript ID: PITPNM2-AS1:8 
HGNC Gene Symbol: PITPNM2-AS1    
HGNC Full Gene Name: PITPNM2 antisense RNA 1
Ensembl Gene ID: ENSG00000251497
Ensembl Transcript ID: ENST00000537292
Location (hg38): chr12:123082790-123084129
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1065 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000537292; ENST00000537292.1; RP11-197N18.7-002; OTTHUMT00000401351.1; NONHSAT031563
Alternative gene names: ENSG00000251497; RP11-197N18.7; ENSG00000251497.2; OTTHUMG00000168847.1; PITPNM2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.3232 non-coding 
CPAT coding probability 4.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PITPNM2-AS1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARL6IP4-1:2
3.1 lnc-ARL6IP4-1:2
4.0 lnc-ARL6IP4-3:3
4.1 lnc-ARL6IP4-3:3
5.0 lnc-ARL6IP4-3:3
5.1 PITPNM2-AS1:4
5.2 PITPNM2-AS1:8