Transcript: PKP4-AS1:6

Basic information

LNCipedia transcript ID: PKP4-AS1:6 
HGNC Gene Symbol: PKP4-AS1    
HGNC Full Gene Name: PKP4 antisense RNA 1
Ensembl Gene ID: ENSG00000204380
Ensembl Transcript ID: ENST00000442666
Location (hg38): chr2:158678656-158734818
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 825 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442666.1; AC005042.4-002; OTTHUMT00000333245.1; NONHSAT075095
Alternative gene names: ENSG00000204380.2; AC005042.4; OTTHUMG00000153965.1; ENSG00000204380.4; PKP4-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.1516 non-coding 
CPAT coding probability 5.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PKP4-AS1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC148-1:2
4.0 lnc-CCDC148-1:2
4.1 lnc-CCDC148-1:2
5.0 lnc-CCDC148-1:2
5.1 PKP4-AS1:3
5.2 PKP4-AS1:6