Transcript: PLS3-AS1:1

Basic information

LNCipedia transcript ID: PLS3-AS1:1 
LNCipedia gene ID: PLS3-AS1
RefSeq ID: NR_110384
Location (hg38): chrX:115518189-115562731
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1756 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000543279; NONHSAT138255; NR_110384; NR_110384.1
Alternative gene names: ENSG00000256559; AC003983.1; ; PLS3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.9936 non-coding 
CPAT coding probability 1.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PLS3-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP1-241P17.4.1-4:1
3.1 lnc-RP1-241P17.4.1-4:1
4.0 PLS3-AS1:1
4.1 PLS3-AS1:1
5.0 PLS3-AS1:1
5.1 PLS3-AS1:1
5.2 PLS3-AS1:1