Transcript: PLUT:7

Basic information

LNCipedia transcript ID: PLUT:7 
LNCipedia gene ID: PLUT
Location (hg38): chr13:27833444-27921404
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1477 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: NONHSAT140113; ENST00000499662.2
Alternative gene names: ENSG00000247381.2; PDX1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.2203 non-coding 
CPAT coding probability 12.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PLUT:7 yes no no no

Available literature

  1. Akerman (2017), Human Pancreatic β Cell lncRNAs Control Cell-Specific Regulatory Networks., Cell Metab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDX2-2:3
4.0 PDX1-AS1:2
4.1 PDX1-AS1:2
5.0 PDX1-AS1:2
5.1 PLUT:3
5.2 PLUT:7