Transcript: POC1B-AS1:31

Basic information

LNCipedia transcript ID: POC1B-AS1:31 
LNCipedia gene ID: POC1B-AS1
Location (hg38): chr12:89525565-89526824
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 743 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000270344.1|FTMT24700011135.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -139.4528 non-coding 
CPAT coding probability 10.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
POC1B-AS1:31 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TMTC3-14:15
5.0 lnc-TMTC3-14:15
5.1 POC1B-AS1:13
5.2 POC1B-AS1:31