Transcript: POC1B-AS1:42

Basic information

LNCipedia transcript ID: POC1B-AS1:42 
LNCipedia gene ID: POC1B-AS1
Location (hg38): chr12:89559240-89561270
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2031 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1565:2
Alternative gene names:

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -83.2567 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
POC1B-AS1:42 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TMTC3-3:3
4.1 lnc-TMTC3-14:25
5.0 lnc-TMTC3-14:25
5.1 POC1B-AS1:26
5.2 POC1B-AS1:42