Transcript: POC1B-AS1:44

Basic information

LNCipedia transcript ID: POC1B-AS1:44 
LNCipedia gene ID: POC1B-AS1
Ensembl Gene ID: ENSG00000258302
Ensembl Transcript ID: ENST00000552778
Location (hg38): chr12:89561129-89594878
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1711 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000552778.2
Alternative gene names: ENSG00000258302.2; RP11-981P6.1; AC025034.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -64.0355 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
POC1B-AS1:44 yes no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TMTC3-3:4
4.1 lnc-TMTC3-14:27
5.0 lnc-TMTC3-14:27
5.1 POC1B-AS1:28
5.2 POC1B-AS1:44