Transcript: POU6F2-AS2:2

Basic information

LNCipedia transcript ID: POU6F2-AS2:2 
HGNC Gene Symbol: POU6F2-AS2    
HGNC Full Gene Name: POU6F2 antisense RNA 2
Ensembl Gene ID: ENSG00000233854
Ensembl Transcript ID: ENST00000420243
Location (hg38): chr7:38984243-39013551
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 514 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420243; ENST00000420243.1; POU6F2-AS2-002; OTTHUMT00000339284.1; NONHSAT120195
Alternative gene names: ENSG00000233854; AC011292.2; ENSG00000233854.1; POU6F2-AS2; OTTHUMG00000155276.1; FLJ12971


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.292 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
POU6F2-AS2:2 yes no no no

Available literature

  1. Liu (2016), Long noncoding RNA POU6F2-AS2 is associated with oesophageal squamous cell carcinoma., J. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VPS41-1:1
3.1 lnc-VPS41-1:1
4.0 POU6F2-AS2:2
4.1 POU6F2-AS2:2
5.0 POU6F2-AS2:2
5.1 POU6F2-AS2:2
5.2 POU6F2-AS2:2