Transcript: PPEF1-AS1:3

Basic information

LNCipedia transcript ID: PPEF1-AS1:3 
LNCipedia gene ID: PPEF1-AS1
RefSeq ID: NR_046642
Location (hg38): chrX:18688643-18692687
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 492 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_046642.1
Alternative gene names: PPEF1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -38.0627 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PPEF1-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 PPEF1-AS1:3
5.1 PPEF1-AS1:3
5.2 PPEF1-AS1:3